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1

Drug Resistance in Non-B Subtype HIV-1: Impact of HIV-1 Reverse Transcriptase Inhibitors

Singh, Kamalendra, Flores, Jacqueline, Kirby, Karen, Neogi, Ujjwal, Sonnerborg, Anders, Hachiya, Atsuko, Das, Kalyan, Arnold, Eddy, McArthur, Carole, Parniak, Michael, Sarafianos, Stefan

Journal:

Année:

2014

Langue:

english

Fichier:

PDF, 2.22 MB

english, 2014

2

Virological efficacy with first-line antiretroviral treatment in India: predictors of viral failure and evidence of viral resuppression

Shet, Anita, Neogi, Ujjwal, Kumarasamy, N., DeCosta, Ayesha, Shastri, Suresh, Rewari, Bharat Bhushan

Journal:

Tropical Medicine & International Health

Année:

2015

Langue:

english

Fichier:

PDF, 195 KB

english, 2015

3

Analyses of HIV-1 integrase sequences prior to South African national HIV-treatment program and available of integrase inhibitors in Cape Town, South Africa

Brado, Dominik, Obasa, Adetayo Emmanuel, Ikomey, George Mondinde, Cloete, Ruben, Singh, Kamalendra, Engelbrecht, Susan, Neogi, Ujjwal, Jacobs, Graeme Brendon

Journal:

Scientific Reports

Année:

2018

Langue:

english

Fichier:

PDF, 2.54 MB

english, 2018

4

Author Correction: Analyses of HIV-1 integrase sequences prior to South African national HIV-treatment program and availability of integrase inhibitors in Cape Town, South Africa

Brado, Dominik, Obasa, Adetayo Emmanuel, Ikomey, George Mondinde, Cloete, Ruben, Singh, Kamalendra, Engelbrecht, Susan, Neogi, Ujjwal, Jacobs, Graeme Brendon

Journal:

Scientific Reports

Année:

2018

Langue:

english

Fichier:

PDF, 666 KB

english, 2018

5

Effect of therapy switch on time to second-line antiretroviral treatment failure in HIV-infected patients

Häggblom, Amanda, Santacatterina, Michele, Neogi, Ujjwal, Gisslen, Magnus, Hejdeman, Bo, Flamholc, Leo, Sönnerborg, Anders, Paraskevis, Dimitrios

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 4.41 MB

english, 2017

6

Following the path: Increasing trends of HIV-1 drug resistance in China

Gupta, Soham, Neogi, Ujjwal

Journal:

EClinicalMedicine

Année:

2020

Langue:

english

Fichier:

PDF, 261 KB

english, 2020

7

In vitro replicative fitness of early Transmitted founder HIV-1 variants and sensitivity to Interferon alpha

Ashok kumar, Manickam, Sonawane, Aanand, Sperk, Maike, Tripathy, Srikanth P., Neogi, Ujjwal, Hanna, Luke Elizabeth

Journal:

Scientific Reports

Année:

2020

Langue:

english

Fichier:

PDF, 2.65 MB

english, 2020

8

Genetic analysis of HIV-1 Circulating Recombinant Form 02_AG, B and C subtype-specific envelope sequences from Northern India and their predicted co-receptor usage

Ujjwal Neogi, Vikas Sood, Arpita Chowdhury, Shukla Das, Vishnampettai G Ramachandran, Vijesh K Sreedhar, Ajay Wanchu, Nilanjana Ghosh, Akhil C Banerjea

Journal:

AIDS Research and Therapy

Année:

2009

Langue:

english

Fichier:

PDF, 358 KB

english, 2009

9

Genetic and functional analysis of HIV-1 Rev Responsive Element (RRE) sequences from North-India

Yogeshwar Sharma, Ujjwal Neogi, Vikas Sood, Snigdha Banerjee, Subodh Samrat, Ajay Wanchu, Surjit Singh, Akhil C Banerjea

Journal:

AIDS Research and Therapy

Année:

2010

Langue:

english

Fichier:

PDF, 1.99 MB

english, 2010

10

Co-receptor tropism prediction among 1045 Indian HIV-1 subtype C sequences: Therapeutic implications for India

Ujjwal Neogi, Sreenivasa B Prarthana, George D'Souza, Ayesha DeCosta, Vijesh S Kuttiatt, Udaykumar Ranga, Anita Shet

Journal:

AIDS Research and Therapy

Année:

2010

Langue:

english

Fichier:

PDF, 723 KB

english, 2010

11

Novel HIV-1 long terminal repeat (LTR) sequences of subtype B and mosaic intersubtype B/C recombinants in North India

Ujjwal Neogi, Vikas Sood, Nidhi Goel, Ajay Wanchu, Akhil C. Banerjea

Journal:

Archives of Virology

Année:

2008

Langue:

english

Fichier:

PDF, 333 KB

english, 2008

12

Emergence of HIV-1 drug resistance in antiretroviral therapy experienced perinatally infected children in South India

Ujjwal Neogi,Pravat Nalini Sahoo,Ayesha De Costa,Anita Shet

Journal:

BMC Infectious Diseases

Année:

2012

Langue:

english

Fichier:

PDF, 132 KB

english, 2012

13

High viremia and low level of transmitted drug resistance in anti-retroviral therapy-naïve perinatally-infected children and adolescents with HIV-1 subtype C infection

Ujjwal Neogi, Pravat Nalini Sahoo, Ayesha De Costa, Anita Shet

Journal:

BMC Infectious Diseases

Année:

2012

Langue:

english

Fichier:

PDF, 877 KB

english, 2012

14

Clade C HIV-1 isolates circulating in Southern Africa exhibit a greater frequency of dicysteine motif-containing Tat variants than those in Southeast Asia and cause increased neurovirulence

Vasudev R Rao, Ujjwal Neogi, Joshua S Talboom, Ligia Padilla…

Journal:

Année:

2013

Langue:

english

Fichier:

PDF, 1.50 MB

english, 2013

15

Diversity of HIV Type 1 Long Terminal Repeat (LTR) Sequences Following Mother-to-Child Transmission in North India

Neogi, Ujjwal, Sharma, Yogeshwar, Sood, Vikas, Wanchu, Ajay, Banerjea, Akhil C.

Journal:

AIDS Research and Human Retroviruses

Année:

2010

Langue:

english

Fichier:

PDF, 357 KB

english, 2010

16

MDR1gene polymorphisms and HIV therapeutic response in South Indian population

Lingaiah, Shruthi, Shet, Anita, Shet, Arun S, Neogi, Ujjwal

Journal:

BMC Infectious Diseases

Année:

2014

Langue:

english

Fichier:

PDF, 88 KB

english, 2014

17

Genetic Architecture of HIV Type 1 Nef and Tat from HLA-B57-Typed Long-Term Survivors in an Indian Cohort of Perinatally HIV-Infected Children

Neogi, Ujjwal, Palchaudhuri, Riya, Bommana, Sankhya, Shet, Anita

Journal:

AIDS Research and Human Retroviruses

Année:

2013

Langue:

english

Fichier:

PDF, 230 KB

english, 2013

18

Phylogenetic Characterization of Six Full-Length HIV-1 Subtype C Molecular Clones from Three Patients: Identification of Rare Subtype C Strains Containing Two NF-κB Motifs in the Long Terminal Repeat

Hanna, Luke Elizabeth, Neogi, Ujjwal, Ranga, Udaykumar, Swaminathan, Soumya, Prasad, Vinayaka R.

Journal:

AIDS Research and Human Retroviruses

Année:

2014

Langue:

english

Fichier:

PDF, 372 KB

english, 2014

19

Characterization of HIV Type 1 Subtype C protease Gene: Selection of L63P Mutation in Protease Inhibitor-Naive Indian Patients

Neogi, Ujjwal, Sahoo, Pravat Nalini, Kumar, Ravi, De Costa, Ayesha, Shet, Anita

Journal:

AIDS Research and Human Retroviruses

Année:

2011

Langue:

english

Fichier:

PDF, 1.14 MB

english, 2011

20

Naturally Occurring Polymorphisms and Primary Drug Resistance Profile Among Antiretroviral-Naive Individuals in Bangalore, India

Neogi, Ujjwal, Prarthana, B.S., Gupta, Soham, D'souza, George, De Costa, Ayesha, Kuttiatt, Vijesh Sreedhar, Arumugam, Karthika, Shet, Anita

Journal:

AIDS Research and Human Retroviruses

Année:

2010

Langue:

english

Fichier:

PDF, 772 KB

english, 2010

21

Genetic Characterization of HIV Type 1 Tat Exon 1 from a Southern Indian Clinical Cohort: Identification of Unique Epidemiological Signature Residues

Neogi, Ujjwal, Gupta, Soham, Sahoo, Pravat Nalini, Shet, Anita, Rao, Shwetha D., Ranga, Udaykumar, Prasad, Vinayaka R.

Journal:

AIDS Research and Human Retroviruses

Année:

2012

Langue:

english

Fichier:

PDF, 1.70 MB

english, 2012

22

Performance of Genotypic Tools for Prediction of Tropism in HIV-1 Subtype C V3 Loop Sequences

Gupta, Soham, Neogi, Ujjwal, Srinivasa, Hiresave, Shet, Anita

Journal:

Année:

2015

Langue:

english

Fichier:

PDF, 91 KB

english, 2015

23

Multiple NF-κB Sites in HIV-1 Subtype C Long Terminal Repeat Confer Superior Magnitude of Transcription and Thereby the Enhanced Viral Predominance

Bachu, Mahesh, Yalla, Swarupa, Asokan, Mangaiarkarasi, Verma, Anjali, Neogi, Ujjwal, Sharma, Shilpee, Murali, Rajesh V., Mukthey, Anil Babu, Bhatt, Raghavendra, Chatterjee, Snehajyoti, Rajan, Roshan E

Journal:

Journal of Biological Chemistry

Année:

2012

Langue:

english

Fichier:

PDF, 4.33 MB

english, 2012

24

Genetic factors associated with slow progression of HIV among perinatally-infected Indian children

Chaudhuri, Riya Pal, Neogi, Ujjwal, Rao, Shwetha D., Shet, Anita

Journal:

Indian Pediatrics

Année:

2014

Langue:

english

Fichier:

PDF, 447 KB

english, 2014

25

Minor viral population with drug-resistant mutation and risk of persistent low-level viremia or ‘blips’ in HIV-1 subtype C

Neogi, Ujjwal, Sonnerborg, Anders

Journal:

Année:

2014

Langue:

english

Fichier:

PDF, 299 KB

english, 2014

26

Novel tetra-peptide insertion in Gag-p6 ALIX-binding motif in HIV-1 subtype C associated with protease inhibitor failure in Indian patients

Neogi, Ujjwal, Rao, Shwetha D., Bontell, Irene, Verheyen, Jens, Rao, Vasudev R., Gore, Sagar C., Soni, Neelesh, Shet, Anita, Schülter, Eugen, Ekstrand, Maria L., Wondwossen, Amogne, Kaiser, Rolf, Madh

Journal:

Année:

2014

Langue:

english

Fichier:

PDF, 678 KB

english, 2014

27

Mutational Heterogeneity in p6 Gag Late Assembly (L) Domains in HIV-1 Subtype C Viruses from South Africa

Neogi, Ujjwal, Engelbrecht, Susan, Claassen, Mathilda, Jacobs, Graeme Brendon, van Zyl, Gert, Preiser, Wolfgang, Sonnerborg, Anders

Journal:

AIDS Research and Human Retroviruses

Année:

2016

Langue:

english

Fichier:

PDF, 274 KB

english, 2016

28

Factors influencing the efficacy of rilpivirine in HIV-1 subtype C in low- and middle-income countries

Neogi, Ujjwal, Häggblom, Amanda, Singh, Kamalendra, Rogers, Leonard C., Rao, Shwetha D., Amogne, Wondwossen, Schülter, Eugen, Zazzi, Maurizio, Arnold, Eddy, Sarafianos, Stefan G., Sönnerborg, Anders

Journal:

Journal of Antimicrobial Chemotherapy

Année:

2016

Langue:

english

Fichier:

PDF, 342 KB

english, 2016

29

Can HIV reverse transcriptase activity assay be a low-cost alternative for viral load monitoring in resource-limited settings?

Gupta, Soham, Palchaudhuri, Riya, Neogi, Ujjwal, Srinivasa, Hiresave, Ashorn, Per, De Costa, Ayesha, Källander, Clas, Shet, Anita

Journal:

Année:

2016

Langue:

english

Fichier:

PDF, 979 KB

english, 2016

30

Virological failure in patients with HIV-1 subtype C receiving antiretroviral therapy: an analysis of a prospective national cohort in Sweden

Häggblom, Amanda, Svedhem, Veronica, Singh, Kamalendra, Sönnerborg, Anders, Neogi, Ujjwal

Journal:

Année:

2016

Langue:

english

Fichier:

PDF, 1.75 MB

english, 2016

31

HIV-1 Coreceptor Tropism in India

Gupta, Soham, Neogi, Ujjwal, Srinivasa, Hiresave, Banerjea, Akhil C., Shet, Anita

Journal:

JAIDS Journal of Acquired Immune Deficiency Syndromes

Année:

2014

Langue:

english

Fichier:

PDF, 336 KB

english, 2014

32

Selection of nonnucleoside reverse transcriptase inhibitor-associated mutations in HIV-1 subtype C: evidence of etravirine cross-resistance

Neogi, Ujjwal, Shet, Anita, Shamsundar, Ranjani, Ekstrand, Maria L

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 332 KB

english, 2011

33

Phylogenetic Analysis of Ethiopian HIV-1 Subtype C Near Full-Length Genomes Reveals High Intrasubtype Diversity and a Strong Geographical Cluster

Amogne, Wondwossen, Bontell, Irene, Grossmann, Sebastian, Aderaye, Getachew, Lindquist, Lars, Sönnerborg, Anders, Neogi, Ujjwal

Journal:

AIDS Research and Human Retroviruses

Année:

2016

Langue:

english

Fichier:

PDF, 588 KB

english, 2016

34

Effectiveness of First-line Antiretroviral Therapy and Acquired Drug Resistance Among HIV-1–infected Children in India

Shet, Anita, Neogi, Ujjwal, Sahoo, Pravat Nalini, De Costa, Ayesha

Journal:

Pediatric Infectious Disease Journal

Année:

2013

Langue:

english

Fichier:

PDF, 197 KB

english, 2013

35

Gut microbiota diversity predicts immune status in HIV-1 infection

Nowak, Piotr, Troseid, Marius, Avershina, Ekatarina, Barqasho, Babilonia, Neogi, Ujjwal, Holm, Kristian, Hov, Johannes R., Noyan, Kajsa, Vesterbacka, Jan, Svärd, Jenny, Rudi, Knut, Sönnerborg, Anders

Journal:

Année:

2015

Langue:

english

Fichier:

PDF, 2.00 MB

english, 2015

36

Increased replication capacity following evolution of PYxE insertion in Gag-p6 is associated with enhanced virulence in HIV-1 subtype C from East Africa

Aralaguppe, Shambhu G., Winner, Dane, Singh, Kamalendra, Sarafianos, Stefan G., Quiñones-Mateu, Miguel E., Sönnerborg, Anders, Neogi, Ujjwal

Journal:

Journal of Medical Virology

Année:

2016

Langue:

english

Fichier:

PDF, 867 KB

english, 2016

37

Quantitative humoral profiling of the HIV-1 proteome in elite controllers and patients with very long-term efficient antiretroviral therapy

Zhang, Wang, Morshed, Mohammed M., Noyan, Kajsa, Russom, Aman, Sönnerborg, Anders, Neogi, Ujjwal

Journal:

Scientific Reports

Année:

2017

Langue:

english

Fichier:

PDF, 1.95 MB

english, 2017

38

Recent increased identification and transmission of HIV-1 unique recombinant forms in Sweden

Neogi, Ujjwal, Siddik, Abu Bakar, Kalaghatgi, Prabhav, Gisslén, Magnus, Bratt, Göran, Marrone, Gaetano, Sönnerborg, Anders

Journal:

Scientific Reports

Année:

2017

Langue:

english

Fichier:

PDF, 2.45 MB

english, 2017

39

Richer gut microbiota with distinct metabolic profile in HIV infected Elite Controllers

Vesterbacka, Jan, Rivera, Javier, Noyan, Kajsa, Parera, Mariona, Neogi, Ujjwal, Calle, Malu, Paredes, Roger, Sönnerborg, Anders, Noguera-Julian, Marc, Nowak, Piotr

Journal:

Scientific Reports

Année:

2017

Langue:

english

Fichier:

PDF, 3.46 MB

english, 2017

40

Subtype-independent near full-length HIV-1 genome sequencing and assembly to be used in large molecular epidemiological studies and clinical management

Grossmann, Sebastian, Nowak, Piotr, Neogi, Ujjwal

Journal:

Journal of the International AIDS Society

Année:

2015

Langue:

english

Fichier:

PDF, 1.07 MB

english, 2015

41

Ex vivo antiretroviral potency of newer integrase strand transfer inhibitors cabotegravir and bictegravir in HIV-1 non-B subtypes

Neogi, Ujjwal, Singh, Kamlendra, Aralaguppe, Shambhu G., Rogers, Leonard C., Njenda, Duncan T., Sarafianos, Stefan G., Hejdeman, Bo, Sönnerborg, Anders

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 906 KB

english, 2017

42

Transcriptomics and Targeted Proteomics Analysis to Gain Insights Into the Immune-control Mechanisms of HIV-1 Infected Elite Controllers

Zhang, Wang, Ambikan, Anoop T., Sperk, Maike, van Domselaar, Robert, Nowak, Piotr, Noyan, Kajsa, Russom, Aman, Sönnerborg, Anders, Neogi, Ujjwal

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 1.12 MB

english, 2017

43

Plasma soluble factor following two decades prolonged suppressive antiretroviral therapy in HIV-1-positive males

Sperk, Maike, Zhang, Wang, Nowak, Piotr, Neogi, Ujjwal

Journal:

Medicine (Medicine Publishing Company Ltd)

Année:

2018

Langue:

english

Fichier:

PDF, 792 KB

english, 2018

44

Phenotypic co-receptor tropism and Maraviroc sensitivity in HIV-1 subtype C from East Africa

Siddik, Abu Bakar, Haas, Alexandra, Rahman, Md Shanawazur, Aralaguppe, Shambhu Ganeshappa, Amogne, Wondwossen, Bader, Joelle, Klimkait, Thomas, Neogi, Ujjwal

Journal:

Scientific Reports

Année:

2018

Langue:

english

Fichier:

PDF, 2.42 MB

english, 2018

45

Unique phenotypic characteristics of recently transmitted HIV-1 subtype C envelope glycoprotein gp120: Use of CXCR6 co-receptor by transmitted founder viruses

Ashokkumar, Manickam, Aralaguppe, Shambhu G, Tripathy, Srikanth P, Hanna, Luke Elizabeth, Neogi, Ujjwal

Journal:

Journal of Virology

Année:

2018

Langue:

english

Fichier:

PDF, 3.50 MB

english, 2018

46

The microbial metabolite TMAO in association with inflammation and microbial dysregulation in three HIV cohorts at various disease stages

Missailidis, Catharina, Neogi, Ujjwal, Stenvinkel, Peter, Trøseid, Marius, Nowak, Piotr, Bergman, Peter

Journal:

Année:

2018

Langue:

english

Fichier:

PDF, 515 KB

english, 2018

47

Limited evolution but increasing trends of primary non-nucleoside reverse transcriptase inhibitor resistance mutations in therapy-naive HIV-1-infected individuals in India

Neogi, Ujjwal, Gupta, Soham, Palchaudhuri, Riya, Rao, Shwetha D, Shastri, Suresh, Diwan, Vishal, Laishram, Ranbir S, De Costa, Ayesha, Shet, Anita

Journal:

Antiviral Therapy

Année:

2014

Langue:

english

Fichier:

PDF, 251 KB

english, 2014

48

Pretreatment drug resistance in a large countrywide Ethiopian HIV-1C cohort: a comparison of Sanger and high-throughput sequencing

Telele, Nigus Fikrie, Kalu, Amare Worku, Gebre-Selassie, Solomon, Fekade, Daniel, Abdurahman, Samir, Marrone, Gaetano, Neogi, Ujjwal, Tegbaru, Belete, Sönnerborg, Anders

Journal:

Scientific Reports

Année:

2018

Langue:

english

Fichier:

PDF, 1.96 MB

english, 2018

49

Long-Term Efficacy of First Line Antiretroviral Therapy in Indian HIV-1 Infected Patients: A Longitudinal Cohort Study

Neogi, Ujjwal, Heylen, Elsa, Shet, Anita, Chandy, Sara, Shamsunder, Ranjani, Sönnerborg, Anders, Ekstrand, Maria L., Ensoli, Barbara

Journal:

Année:

2013

Langue:

english

Fichier:

PDF, 304 KB

english, 2013

50

Temporal Trends in the Swedish HIV-1 Epidemic: Increase in Non-B Subtypes and Recombinant Forms over Three Decades

Neogi, Ujjwal, Häggblom, Amanda, Santacatterina, Michele, Bratt, Göran, Gisslén, Magnus, Albert, Jan, Sonnerborg, Anders, Paraskevis, Dimitrios

Journal:

Année:

2014

Langue:

english

Fichier:

PDF, 534 KB

english, 2014